codesFromCohort

Get concept ids from a provided path to cohort json files

Generate a candidate code list for the Observational Medical Outcomes Partnership (OMOP) common data model based on string matching. For a given search strategy, a candidate code list will be returned.

Edward Burn

CodelistGenerator

Identify Relevant Clinical Codes and Evaluate Their Use

Marti Catala

Xihang Chen

Nuria Mercade-Besora

Mike Du

Danielle Newby

codesFromCohort function

<dl><dt>path</dt>
<dd>Path to a file or folder containing JSONs of cohort definitions</dd>
<dt>cdm</dt>
<dd>A cdm reference created with CDMConnector</dd>
<dt>type</dt>
<dd>Can be "codelist", "codelist_with_details", or
"concept_set_expression"</dd></dl>

Arguments

Get concept ids from a provided path to cohort json files — codesFromCohort

<dl>

<dt>path</dt>
<dd>Path to a file or folder containing JSONs of cohort definitions</dd>


<dt>cdm</dt>
<dd>A cdm reference created with CDMConnector</dd>


<dt>type</dt>
<dd>Can be "codelist", "codelist_with_details", or
"concept_set_expression"</dd>

</dl>

codesFromCohort: Get concept ids from a provided path to cohort json files

Description

Usage

Value

Arguments