CodelistGenerator (version 3.4.0)

codesFromConceptSet: Get concept ids from a provided path to json files

Description

Get concept ids from a provided path to json files

Usage

codesFromConceptSet(path, cdm, type = c("codelist"))

Value

Named list with concept_ids for each concept set

Arguments

path

Path to a file or folder containing JSONs of concept sets

cdm

A cdm reference created with CDMConnector

type

Can be "codelist", "codelist_with_details", or "concept_set_expression"

Examples

# \donttest{
cdm <- mockVocabRef("database")
x <- codesFromConceptSet(cdm = cdm,
                         path =  system.file(package = "CodelistGenerator",
                         "concepts_for_mock"))
x
CDMConnector::cdmDisconnect(cdm)
# }