CodelistGenerator (version 4.0.0)

addConcepts: Add concepts to a codelist

Description

Add concepts to a codelist

Usage

addConcepts(x, cdm, concepts, codelistName = NULL)

Value

A codelist

Arguments

x

A codelist.

cdm

A cdm reference to an OMOP CDM dataset. If data is held within a database, the vocabulary tables should be in the same schema as the clinical tables (person, observation period, and so on).

concepts

Concepts_ID to add

codelistName

Name or names of codelist in x. If NULL, all codelist present in x will be considered.

Examples

# \donttest{
library(omock)
library(CDMConnector)

# Creating CDM object
cdm <- mockCdmFromDataset(datasetName = "GiBleed")

# Creating codelist
codelist <- getDrugIngredientCodes(cdm,
                                   nameStyle = "{concept_name}")

# Add a concept to all the codelists:
codelist$acetaminophen
codelist <- codelist |>
 addConcepts(cdm, concepts = c(1L))
codelist$acetaminophen

# Add a concept to a specific codelist
codelist$amiodarone
codelist <- codelist |>
  addConcepts(cdm, concepts = c(2L), codelistName = "amiodarone")
codelist$amiodarone

# See function: `excludeConcepts()` for details on how to remove specific concepts
# from a codelist
# }