CodelistGenerator (version 4.0.0)

asCodelistWithDetails: Coerce to a codelist with details

Description

Coerce to a codelist with details

Usage

asCodelistWithDetails(x, cdm, ...)
# S3 method for codelist_with_details
asCodelistWithDetails(x, ...)
# S3 method for codelist
asCodelistWithDetails(x, cdm, ...)
# S3 method for candidate_codes
asCodelistWithDetails(x, cdm, ...)

Value

codelist

Arguments

x

Only codelist and candidate_codes are currently supported.

cdm

A cdm reference to an OMOP CDM dataset. If data is held within a database, the vocabulary tables should be in the same schema as the clinical tables (person, observation period, and so on).

...

For extensibility

Examples

# \donttest{
library(omock)
library(CDMConnector)

# Creating CDM object
path <- downloadMockDataset(datasetName = "GiBleed",
                            path = NULL,
                            overwrite = NULL)
cdm <- mockCdmFromDataset(datasetName = "GiBleed")

# Create codelist_with_details from a codelist
codelist <- getDrugIngredientCodes(cdm,
                                   name = "acetaminophen",
                                   nameStyle = "{concept_name}",
                                   type = "codelist")

asCodelistWithDetails(codelist, cdm)

# Create codelist from a candidate_codes
codelist <- getCandidateCodes(cdm,
                             keywords = "arthritis")

asCodelistWithDetails(codelist)
# }