newCodeSearch

<a href="https://lifecycle.r-lib.org/articles/stages.html#experimental"><img src="figures/lifecycle-experimental.svg?package=CodelistGenerator&version=4.1.0" alt="[Experimental]"></a>
This function will be moved to omopgenerics (and re-exported by
CodelistGenerator) once stable.

Generate a candidate code list for the Observational Medical Outcomes Partnership (OMOP) common data model based on string matching. For a given search strategy, a candidate code list will be returned.

Edward Burn

CodelistGenerator

Identify Relevant Clinical Codes and Evaluate Their Use

Marta Alcalde-Herraiz

Martí Català

Xihang Chen

Nuria Mercade-Besora

Mike Du

Danielle Newby

newCodeSearch function

<dl><dt>codes</dt>
<dd>A tibble with concept ids. It must contain "search_id",
"concept_id", "found_from", "vocabulary_name", "concept_name", "domain_id",
"vocabulary_id", "concept_class_id", "standard_concept", "concept_code",
"valid_start_date", "valid_end_date" and "invalid_reason" as columns.</dd>
<dt>searchStrategy</dt>
<dd>A tibble with the search strategy used to derive the
codes. It must contain "search_id", "strategy_name" and "strategy_value" as
columns.</dd></dl>

Arguments

<a href='https://lifecycle.r-lib.org/articles/stages.html#experimental'><img src='figures/lifecycle-experimental.svg' alt='[Experimental]' /></a>
This function will be moved to omopgenerics (and re-exported by
CodelistGenerator) once stable.

Create a new code_search object — newCodeSearch

<dl>

<dt>codes</dt>
<dd>A tibble with concept ids. It must contain "search_id",
"concept_id", "found_from", "vocabulary_name", "concept_name", "domain_id",
"vocabulary_id", "concept_class_id", "standard_concept", "concept_code",
"valid_start_date", "valid_end_date" and "invalid_reason" as columns.</dd>


<dt>searchStrategy</dt>
<dd>A tibble with the search strategy used to derive the
codes. It must contain "search_id", "strategy_name" and "strategy_value" as
columns.</dd>

</dl>

newCodeSearch: Create a new `code_search` object

Description

Usage

Value

Arguments