CohortCharacteristics (version 1.1.1)

plotCohortTiming: Plot summariseCohortTiming results.

Description

Usage

plotCohortTiming(
  result,
  plotType = "boxplot",
  timeScale = "days",
  uniqueCombinations = TRUE,
  facet = c("cdm_name", "cohort_name_reference"),
  colour = c("cohort_name_comparator"),
  style = NULL
)

Value

A ggplot.

Arguments

result

A summarised_result object.

plotType

Type of desired formatted table, possibilities are "boxplot" and "densityplot".

timeScale

Time scale to show, it can be "days" or "years".

uniqueCombinations

Whether to restrict to unique reference and comparator comparisons.

facet

Columns to facet by. See options with availablePlotColumns(result). Formula is also allowed to specify rows and columns.

colour

Columns to color by. See options with availablePlotColumns(result).

style

Visual theme to apply. Character, or NULL. If a character, this may be either the name of a built-in style (see plotStyle()), or a path to a .yml file that defines a custom style. If NULL, the function will use the explicit default style, unless a global style option is set (see setGlobalPlotOptions()), or a _brand.yml file is present (in that order). Refer to the package vignette on styles to learn more.

Examples

if (FALSE) {
library(CohortCharacteristics)
library(omock)
library(DrugUtilisation)

cdm <- mockCdmFromDataset(datasetName = "GiBleed", source = "duckdb")

cdm <- generateIngredientCohortSet(
  cdm = cdm,
  name = "my_cohort",
  ingredient = c("acetaminophen", "morphine", "warfarin")
)

timings <- summariseCohortTiming(cdm$my_cohort)

plotCohortTiming(
  timings,
  timeScale = "years",
  uniqueCombinations = FALSE,
  facet = c("cdm_name", "cohort_name_reference"),
  colour = c("cohort_name_comparator")
)

plotCohortTiming(
  timings,
  plotType = "densityplot",
  timeScale = "years",
  uniqueCombinations = FALSE,
  facet = c("cdm_name", "cohort_name_reference"),
  colour = c("cohort_name_comparator")
)

cdmDisconnect(cdm = cdm)
}