connectSnpPair

ggplot object. The contrast Manhattan plot to be annotated.

cplot

snp1

snp2

See <code>ggplot2::geom_segment</code>. Default to "dotted".

linetype

See <code>ggplot2::annotate</code>. Default to 0.

hjust

See <code>ggplot2::annotate</code>. Default to 3.

text_size


Annotate a pair of SNPs in the contrast Manhattan plot


Implements a generalized version of the CDH test (<DOI:10.1371/journal.pone.0028145> and <DOI:10.1186/s12859-016-1006-9>)
for detecting compound heterozygosity on a
genome-wide level, due to usage of generalized linear models it allows flexible
analysis of binary and continuous traits with covariates.

connectSnpPair: Annotate a pair of SNPs in the contrast Manhattan plot

Description

Usage

Arguments

Value