gcdhRegion

pl_gwas

n_shift

numeric. All variants with physical position no more than half the specified kb distance (decimal permitted) from the named variant are loaded.

window

character. Path to the regional bed file (without .bed extension).

gwas_col_select

collapse_matrix

rm_shifted_files

dist_threshold


A region around some SNP is extracted and GCDH analysis is conducted over that region.


Implements a generalized version of the CDH test (<DOI:10.1371/journal.pone.0028145> and <DOI:10.1186/s12859-016-1006-9>)
for detecting compound heterozygosity on a
genome-wide level, due to usage of generalized linear models it allows flexible
analysis of binary and continuous traits with covariates.

gcdhRegion: Run GCDH over a region

Description

Usage

Arguments

Value