getHaplo

Genotype data frame. Must have 4 columns, the first two being "FID" and "IID", the last two being the genotypes.

geno

Column indices used for formatting haplotype string.

format_idx

Implements a generalized version of the CDH test (<DOI:10.1371/journal.pone.0028145> and <DOI:10.1186/s12859-016-1006-9>)
for detecting compound heterozygosity on a
genome-wide level, due to usage of generalized linear models it allows flexible
analysis of binary and continuous traits with covariates.

getHaplo: Infer haplotypes for a pair of SNPs

Description

Usage

Arguments

Value