getHaplos

Second genotype data frame, must be of the same dimension as the first. The first two column must be FID and IID.

Phenotype data frame, the first two columns must be FID and IID

A genotype data frame, assumed to be different from g1 and g2, used for pooling.

pool


Inferring haplotypes from two genotype data frames, and join with phenotypes


Implements a generalized version of the CDH test (<DOI:10.1371/journal.pone.0028145> and <DOI:10.1186/s12859-016-1006-9>)
for detecting compound heterozygosity on a
genome-wide level, due to usage of generalized linear models it allows flexible
analysis of binary and continuous traits with covariates.

getHaplos: Inferring haplotypes from two genotype data frames, and join with phenotypes

Description

Usage

Arguments

Value