plTrim

pl_gwas

character. Suffix to the new plink file names.

suffix


This function calculates number of individuals in .fam file (n1)
and number of individuals in phenotype file (n2). If n1 > n2, then
all the individuals not included in the phenotype file will be 
removed from plink files.


Implements a generalized version of the CDH test (<DOI:10.1371/journal.pone.0028145> and <DOI:10.1186/s12859-016-1006-9>)
for detecting compound heterozygosity on a
genome-wide level, due to usage of generalized linear models it allows flexible
analysis of binary and continuous traits with covariates.

plTrim: Trim plink files

Description

Usage

Arguments

Value