CollapsABEL (version 0.10.11)

readPlinkOut: Read plink output files

Description

Read plink output files

Usage

readPlinkOut(filename, ...)

Arguments

filename

Filenames of plink output files, see collenv$.plink_out_ext

...

passed to one of readAssoc, readQassoc, readLinear, readLogistic

Value

data.frame

Examples

## Not run: 
# dat1 = readPlinkOut("assoc/mmp13.assoc")
# dat2 =    readAssoc("assoc/mmp13.assoc")
# all(na.omit(dat1 == dat2))
# dat1 = readPlinkOut("assoc/mmp13.assoc", c("CHR", "SNP", "P", "OR"))
# dat2 =    readAssoc("assoc/mmp13.assoc", c("CHR", "SNP", "P", "OR"))
# all(na.omit(dat1 == dat2))
# dat1 = readPlinkOut("assoc/mmp13.qassoc")
# dat2 =   readQassoc("assoc/mmp13.qassoc")
# all(na.omit(dat1 == dat2))
# dat1 = readPlinkOut("assoc/mmp13.qassoc", c("CHR", "SNP", "P", "R2"))
# dat2 =   readQassoc("assoc/mmp13.qassoc", c("CHR", "SNP", "P", "R2"))
# all(na.omit(dat1 == dat2))
# ## End(Not run)