runGwas

pl_gwas

logical. Wait until GWAS is finished if this is set to TRUE. Default to FALSE.

wait

logical. Whether to save the plGwas object. Default to FALSE.

save_pl_gwas

Implements a generalized version of the CDH test (<DOI:10.1371/journal.pone.0028145> and <DOI:10.1186/s12859-016-1006-9>)
for detecting compound heterozygosity on a
genome-wide level, due to usage of generalized linear models it allows flexible
analysis of binary and continuous traits with covariates.

runGwas: Run a GWAS

Description

Usage

Arguments