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CollessLike R-package

Methods to compute distribution and percentile of balance indices of phylogenetic trees

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Install

install.packages('CollessLike')

Monthly Downloads

9

Version

2.0

License

GPL (>= 2)

Issues

1

Pull Requests

0

Stars

2

Forks

0

Maintainer

Lucia Rotger

Last Published

October 12th, 2019

Functions in CollessLike (2.0)

distribution

Plot the distribution of Colless-Like, Sackin and cophenetic normalized balance indices under the alpha-gamma model and computes the percentile of a tree from previous distributions.
cophen.vector

Computes the cophenetic vector of a phylogenetic tree
cophen.index

Computes the cophenetic balance index of a phylogenetic tree
indices.simulation

Generates random trees and compute their balance indices
colless.like.index

Computes the Colless-like balance index of a phylogenetic tree
balance.indices

Computes Colles-like, Sackin and cophenetic balance indices of a phylogenetic tree.
CollessLike-package

CollessLike
a.g.model

Generates a random tree
sackin.index

Computes the Sackin balance index of a phylogenetic tree