Learn R Programming

ComICS (version 1.0.4)

Computational Methods for Immune Cell-Type Subsets

Description

Provided are Computational methods for Immune Cell-type Subsets, including:(1) DCQ (Digital Cell Quantifier) to infer global dynamic changes in immune cell quantities within a complex tissue; and (2) VoCAL (Variation of Cell-type Abundance Loci) a deconvolution-based method that utilizes transcriptome data to infer the quantities of immune-cell types, and then uses these quantitative traits to uncover the underlying DNA loci.

Copy Link

Version

Install

install.packages('ComICS')

Monthly Downloads

692

Version

1.0.4

License

GPL-2

Maintainer

Yael Steuerman

Last Published

May 13th, 2018

Functions in ComICS (1.0.4)

ComICS

Computational methods for Immune Cell-type Subsets
dcq

DCQ - Digital Cell Quantifier
vocalEx

Example datasets for runnning vocal
vocal

Variation in Cell Abundance Loci
dcqEx

Example datasets for runnning dcq
ComICS-internal

ComICS-internal
commons

Shared Immunological datasets