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CommEcol (version 1.8.1)

Community Ecology Analyses

Description

Autosimilarity curves, standardization of spatial extent, dissimilarity indexes that overweight rare species, phylogenetic and functional (pairwise and multisample) dissimilarity indexes and nestedness for phylogenetic, functional and other diversity metrics. The methods for phylogenetic and functional nestedness is described in Melo, Cianciaruso and Almeida-Neto (2014) . This should be a complement to available packages, particularly 'vegan'.

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Version

Install

install.packages('CommEcol')

Monthly Downloads

340

Version

1.8.1

License

GPL-2

Maintainer

Adriano Sanches Melo

Last Published

June 28th, 2024

Functions in CommEcol (1.8.1)

Artificial dataset containing 4 samples [rows] and 6 species[columns].

Artificial dataset containing 6 samples [rows] and 6 species[columns].

Example of phylogenetic tree containing 6 species.

Artificial dataset containing 5 samples [rows] and 6 species[columns].

Standardization of spatial extent for two metacommunities by subsampling

Partition of pair-wise dissimilarity indices using phylogenetic/functional data

Select cells inside a defined window of a gridded dataset

Tree-like Nestedness of Ecological Metacommunities

Example of phylogenetic tree containing 6 species.

Simulation of species community data along gradients

CommEcol-package

Community Ecology Analyses

Partition of multi-sample dissimilarity indices using phylogenetic/functional data

Goodall dissimilarity index

CommEcol-internal

Internal CommEcol objects

Macroinvertebrate morphospecies living on stones of a stream in southeast Brazil

NNESS and NESS dissimilarity indices

Chao et al. dissimilarity indices

Beta diversity metrics between sites in a moving window along environmental gradients

Autosimilarity curve of species community data