plotInteractive

input

outDir

The prefix to append to each file, if any.

prefix

If true, plots will be pdfs. If false, pngs.


Given a list of functional annotation charts and optionally an 
output directory, this function can output dendrograms, PCA analysis plots and a
correlation matrix to make large-scale comparisons easy.


This package contains functions to accomplish several tasks. It is
able to download full genome databases from UCSC, import .bed files easily,
annotate these .bed file regions with genes (plus distance) from
aforementioned database dumps, interface with DAVID to create functional
annotation and gene ontology enrichment charts based on gene lists (such as
those generated from input .bed files), statistically compare gene ontology
enrichment between multiple experiments and finally visualise and compare
these enrichments using directed acyclic graphs or scatterplots. CompGO also
enables clustering of experiments based on their GO profiles and provides
functions for performing and visualising principle component analysis.

plotInteractive: Interactive plotting function for groups of GO terms

Description

Usage

Arguments