CompGO (version 1.8.1)

plotZScores: Performs z transform on two sets of GO terms and plots scatterplot of result

Description

Generates a scatterplot of z transformed GO terms and plots the result along with the Jaccard metric for each GO term and linear fit + correlation.

Usage

plotZScores(setA, setB, cutoff = NULL, plotAbs = TRUE, plotNA = FALSE, model = "lm")

Arguments

setA

DAVIDFunctionalAnnotationChart object to compare

setB

DAVIDFunctionalAnnotationChart object to compare

cutoff

If you want to apply a Benjamini corrected P-value cutoff to each list before generating Z scores, supply it here

plotAbs

Whether to plot the absolute values of z-scores or the raw values

plotNA

Whether to remove NAs entirely or set all NAs to 0

model

The model to use when plotting linear fit, default 'lm'

Examples

data(funChart1)
data(funChart2)
plotZScores(funChart1, funChart2)