ComplexHeatmap (version 1.10.2)

enhanced_basicplot: Enhanced version of basic barplot and boxplot

Description

Enhanced version of basic barplot and boxplot

Usage

enhanced_basicplot(data, ..., ylim = NULL,
    ylab = deparse(substitute(data)), title = NULL, title_gp = gpar(fontsize = 14),
    type = c("boxplot", "barplot"), width = 0.8, gp = gpar(),
    pch = 1, size = unit(2, "mm"), axis_gp = gpar(fontsize = 8),
    padding = unit(c(2, 18, 2, 2), "mm"),
    heatmap_legend_list = list())

Arguments

data

a matrix, a list or a simple numeric vector. If your data is a data frame please convert it to a matrix in the first place.

...

pass to Heatmap

ylim

ranges on y axis

ylab

label on y axis

title

title of the plot

title_gp

graphic parameters for the title

type

type of the plot

width

relative width of the bar or box

gp

graphic parameters for hte bar or box

pch

shape of outlier points in the boxplot

size

size of hte outlier points in the boxplot

axis_gp

graphic parameters for the axis

padding

padding of the plot

heatmap_legend_list

a list of grob which contains legend. It can be generated by color_mapping_legend,ColorMapping-method.

Value

• No value is returned

Details

This function adds annotations to the barplot or boxplot.

This function is still quite experimental.

Examples

mat = matrix(runif(100), 10)
enhanced_basicplot(mat)
ha = HeatmapAnnotation(char = sample(letters[1:2], 10, replace = TRUE),
                       num = runif(10))
enhanced_basicplot(mat, top_annotation = ha)
enhanced_basicplot(mat, type = "barplot", top_annotation = ha)