Corbi (version 0.6-0)

get_diff_ratio_net: Construct differential expression ratio network

Description

Construct the differential expression ratio network for a single sample.

Usage

get_diff_ratio_net(
  ref.ratio.dist,
  expr.val,
  log.expr = FALSE,
  scale.degree = FALSE
)

Arguments

ref.ratio.dist

The expression ratio distribution profile returned by get_ratio_distribution or get_ratio_distribution2.

expr.val

Numeric vector of gene expression values in the sample.

log.expr

Logical variable indicating whether the input expression vector is in logarithmic scale.

scale.degree

Logical variable indicating whether the degree values are scaled according to the dropout rate.

Value

This function will return a list with the following components:

net

The binary adjacent matrix of differential expression ratio network.

diff

A numeric vector containing the adjusted degree differences of all genes.

degree

A list containing the raw degree differences and sums of all genes.