checkCSetStructure

A <code>CoreSet</code> to be verified

cSet

Should the function also plot the distribution of molecular data?

plotDist

The path to the directory for saving the plots as a string

result.dir

This function checks the structure of a PharamcoSet, ensuring that the
correct annotations are in place and all the required slots are filled so
that matching of cells and drugs can be properly done across different types
of data and with other studies.

A collection of functions and classes which serve as the foundation
for our lab's suite of R packages, such as 'PharmacoGx' and 'RadioGx'. This
package was created to abstract shared functionality from other lab package
releases to increase ease of maintainability and reduce code repetition in
current and future 'Gx' suite programs. Major features include a 'CoreSet'
class, from which 'RadioSet' and 'PharmaSet' are derived, along with get and
set methods for each respective slot. Additional functions related to
fitting and plotting dose response curves, quantifying statistical
correlation and calculating area under the curve (AUC) or survival fraction
(SF) are included. For more details please see the included documentation,
as well as:
Smirnov, P., Safikhani, Z., El-Hachem, N., Wang, D., She, A., Olsen, C.,
Freeman, M., Selby, H., Gendoo, D., Grossman, P., Beck, A., Aerts, H.,
Lupien, M., Goldenberg, A. (2015) <doi:10.1093/bioinformatics/btv723>.
Manem, V., Labie, M., Smirnov, P., Kofia, V., Freeman, M., Koritzinksy, M.,
Abazeed, M., Haibe-Kains, B., Bratman, S. (2018) <doi:10.1101/449793>.

Benjamin HaibeKains

checkCSetStructure: A function to verify the structure of a CoreSet

Description

Usage

Arguments

Value

Examples