pertNumber&lt;-

object

<p>A new 3D <code>array</code> with the number of perturbation experiments per drug and cell line, and data type</p>

value

<p>A generic for the pertNumber method</p>

A collection of functions and classes which serve as the foundation
for our lab's suite of R packages, such as 'PharmacoGx' and 'RadioGx'. This
package was created to abstract shared functionality from other lab package
releases to increase ease of maintainability and reduce code repetition in
current and future 'Gx' suite programs. Major features include a 'CoreSet'
class, from which 'RadioSet' and 'PharmaSet' are derived, along with get and
set methods for each respective slot. Additional functions related to
fitting and plotting dose response curves, quantifying statistical
correlation and calculating area under the curve (AUC) or survival fraction
(SF) are included. For more details please see the included documentation,
as well as:
Smirnov, P., Safikhani, Z., El-Hachem, N., Wang, D., She, A., Olsen, C.,
Freeman, M., Selby, H., Gendoo, D., Grossman, P., Beck, A., Aerts, H.,
Lupien, M., Goldenberg, A. (2015) <doi:10.1093/bioinformatics/btv723>.
Manem, V., Labie, M., Smirnov, P., Kofia, V., Freeman, M., Koritzinksy, M.,
Abazeed, M., Haibe-Kains, B., Bratman, S. (2018) <doi:10.1101/449793>.

Benjamin HaibeKains

CoreGx

Classes and Functions to Serve as the Basis for Other 'Gx'
Packages

Petr Smirnov

Ian Smith

Christopher Eeles

Benjamin Haibe-Kains

pertNumber&lt;- function

pertNumber&lt;- Generic — pertNumber&lt;-

pertNumber&lt;- Generic

pertNumber<-: pertNumber<- Generic

Description

Usage

Arguments

Value

Examples