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CoreMicrobiomeR (version 0.1.0)

Identification of Core Microbiome

Description

The Core Microbiome refers to the group of microorganisms that are consistently present in a particular environment, habitat, or host species. These microorganisms play a crucial role in the functioning and stability of that ecosystem. Identifying these microorganisms can contribute to the emerging field of personalized medicine. The 'CoreMicrobiomeR' is designed to facilitate the identification, statistical testing, and visualization of this group of microorganisms.This package offers three key functions to analyze and visualize microbial community data. This package has been developed based on the research papers published by Pereira et al.(2018) and Beule L, Karlovsky P. (2020) .

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Version

Install

install.packages('CoreMicrobiomeR')

Monthly Downloads

145

Version

0.1.0

License

GPL-3

Maintainer

Mohammad Samir Farooqi

Last Published

April 3rd, 2024

Functions in CoreMicrobiomeR (0.1.0)

demo_tax

Arabidopsis thaliana - Taxonomy dataset
visualize

Visualizing the effect of minimum count on the core size
group_bar_plots

Grouped Bar Plots Based on Sample Size
significance

Testing the Significance of the Identified Core Microbiome
stacked_bar_plots

Stacked Bar Plots Based on Relative Abundance Data
CoreMicrobiome

Identification of Core Microbiome
demo_md

Arabidopsis thaliana - Metadata dataset
demo_otu

Arabidopsis thaliana - OTU dataset