FoxA1_chr19


A coverage matrix calculated using the FoxA1 ChIP-seq data from the T-47D cell line. This matrix was computed using only the reads aligned into the Human chromosome 19


datasets

This package provides a framework for the visualization of
genome coverage profiles. It can be used for ChIP-seq
experiments, but it can be also used for genome-wide nucleosome
positioning experiments or other experiment types where it is
important to have a framework in order to inspect how the
coverage distributed across the genome

Ernesto Lowy

CoverageView

Coverage visualization package for R

FoxA1_chr19 function

<code>matrix</code> with the coverages for the genomic interval corresponding to the gene body of a certain set of genes

Format

FoxA1 ChIP-seq data set for the T-47D cell line from the HudsonAlpha Institute that was used as a test case in the Nature protocol named:
Identifying ChIP-seq enrichment using MACS. Feng J, Liu T, Qin B, Zhang Y, Liu XS. Nat Protoc. 2012 Sep;7(9):1728-40.

Source

A coverage matrix calculated using the FoxA1 ChIP-seq data from the T-47D cell line. This matrix was computed using only the reads aligned into the Human chromosome 19

FoxA1_chr19: Example of a coverage matrix using the ChIP-seq data for the FoxA1 transcription factor experiment

Description

Usage

Arguments

Format

Source

Details

References