# Covid19 Wastewater Analysis Package ![GitHub last commit](https://img.shields.io/github/last-commit/UW-Madison-DSI/Covid19Wastewater) [![GitHub pull requests](https://img.shields.io/github/issues-pr/UW-Madison-DSI/Covid19Wastewater)](https://github.com/UW-Madison-DSI/Covid19Wastewater/pulls) [![License](https://img.shields.io/badge/license-MIT-green)](https://github.com/UW-Madison-DSI/Covid19Wastewater/blob/main/LICENSE.md) [![contributors](https://img.shields.io/github/contributors/UW-Madison-DSI/Covid19Wastewater)](https://github.com/UW-Madison-DSI/Covid19Wastewater/graphs/contributors) ![codesize](https://img.shields.io/github/languages/code-size/UW-Madison-DSI/Covid19Wastewater) ![GitHub release (latest by date including pre-releases)](https://img.shields.io/github/v/release/UW-Madison-DSI/Covid19Wastewater?include_prereleases) This is an R package of utilities to perform wastewater data analysis for pathogenic surveillance and monitoring. This project is a collaboration between the University of Wisconsin-Madison [Data Science Institute (DSI)](https://datascience.wisc.edu), the [Wisconsin Department of Health Services (DHS)](https://www.dhs.wisconsin.gov/covid-19/wastewater.htm), and the [State Lab of Hygiene (SLH)](https://www.slh.wisc.edu/environmental/covid-19-wastewater/). ## Getting started View our [getting started guide](https://github.com/UW-Madison-DSI/Covid19Wastewater/blob/main/docs/getting-started/Starting_Guide.md) to learn more about this R package, or follow the steps below to install, view examples, and get help inside your favorite R interpreter. ### Installation Install from CRAN using this command ``` install.packages("Covid19Wastewater") ``` Otherwise, we have comprehensive instructions [here](https://github.com/UW-Madison-DSI/Covid19Wastewater/blob/main/docs/r-studio/installing-packages.md). After installation, view our vignettes ``` vignette(package = "Covid19Wastewater") ``` or get help. ``` help(package = "Covid19Wastewater") ``` ### Examples We've included a set of [instructional examples](https://github.com/UW-Madison-DSI/Covid19Wastewater/blob/main/examples/README.md) to make this package easy to learn and understand. ## Documentation - View the [Getting Started Guide](https://github.com/UW-Madison-DSI/Covid19Wastewater/blob/main/docs/getting-started/Starting_Guide.md). - View the [API Reference](https://github.com/UW-Madison-DSI/Covid19Wastewater/blob/main/docs/api/api.md). - View the package vignettes with: ``` vignette(package = "Covid19Wastewater") ``` - Look at all package functionality with: ``` help(package = "Covid19Wastewater") ``` ## Package Application We applied this package to Covid-19 data from Wisconsin in our analysis repository [here.](https://github.com/UW-Madison-DSI/Covid19-Wastewater-Analysis) ## License Distributed under the MIT License. See the [license](https://github.com/UW-Madison-DSI/Covid19Wastewater/blob/main/LICENSE.md) for more information. ## Team Email: - Marlin Lee - (~~mailto:mrlee6@wisc.edu~~) - Abe Megahed - (mailto:amegahed@wisc.edu) - Kyllan Wunder - (~~mailto:kwunder@wisc.edu~~) - Steve Goldstein - (~~mailto:sgoldstein@wisc.edu~~) Repos: - Package Link: [https://github.com/UW-Madison-DSI/Covid19Wastewater](https://github.com/UW-Madison-DSI/Covid19Wastewater) - Analysis Link: [https://github.com/UW-Madison-DSI/Covid19-Wastewater-Analysis](https://github.com/UW-Madison-DSI/Covid19-Wastewater-Analysis)

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