nucmerr

<p>A dataset contains some group information subtracted from the "nucmer"
object by "nucmerRMD" function in order to best describe the results.</p>

datasets

A feasible framework for mutation analysis and reverse transcription
polymerase chain reaction (RT-PCR) assay evaluation of COVID-19, including
mutation profile visualization, statistics and mutation ratio of each assay.
The mutation ratio is conducive to evaluating the coverage of RT-PCR assays in
large-sized samples. Mercatelli, D. and Giorgi, F. M. (2020)
<doi:10.20944/preprints202004.0529.v1>.

Shaoqian Ma

CovidMutations

Mutation Analysis Toolkit for COVID-19 (Coronavirus Disease
2019)

Yongyou Zhang

nucmerr function

<p>A dataframe with 437 rows (downsampled mutation sites) and 10
columns.</p>

nucmerr: Preprocessed "nucmer.snps" file using "nucmerRMD" function

Description

Usage

Arguments

Format

Examples