loadingplot.fromVector.Coxmos

This software package provides Cox survival analysis for high-dimensional and multiblock datasets.
It encompasses a suite of functions dedicated from the classical Cox regression to newest analysis,
including Cox proportional hazards model, Stepwise Cox regression, and Elastic-Net Cox regression,
Sparse Partial Least Squares Cox regression (sPLS-COX) incorporating three distinct strategies,
and two Multiblock-PLS Cox regression (MB-sPLS-COX) methods. This tool is designed to adeptly handle
high-dimensional data, and provides tools for cross-validation, plot generation, and additional resources
for interpreting results. While references are available within the corresponding functions,
key literature is mentioned below.
Terry M Therneau (2024) <https://CRAN.R-project.org/package=survival>,
Noah Simon et al. (2011) <doi:10.18637/jss.v039.i05>,
Philippe Bastien et al. (2005) <doi:10.1016/j.csda.2004.02.005>,
Philippe Bastien (2008) <doi:10.1016/j.chemolab.2007.09.009>,
Philippe Bastien et al. (2014) <doi:10.1093/bioinformatics/btu660>,
Kassu Mehari Beyene and Anouar El Ghouch (2020) <doi:10.1002/sim.8671>,
Florian Rohart et al. (2017) <doi:10.1371/journal.pcbi.1005752>.

Pedro Salguero Garcia

Coxmos

Cox MultiBlock Survival

Pedro Salguero García

Sonia Tarazona Campos

Ana Conesa Cegarra

Kassu Mehari Beyene

Luis Meira Machado

Marta Sestelo

Artur Araújo

loadingplot.fromVector.Coxmos function

<dl><dt>model</dt>
<dd>Coxmos model.</dd>
<dt>vector</dt>
<dd>Vector of loading</dd>
<dt>zero.rm</dt>
<dd>Logical. Remove variables equal to 0 (default: FALSE).</dd>
<dt>top</dt>
<dd>Numeric. Show "top" first variables. If top = NULL, all variables are shown (default: NULL).</dd>
<dt>auto.limits</dt>
<dd>Logical. If "auto.limits" = TRUE, limits are detected automatically (default: TRUE).</dd>
<dt>txt.x.angle</dt>
<dd>Numeric. Angle of X text (default: 0).</dd></dl>

Arguments

loadingplot.fromVector.Coxmos — loadingplot.fromVector.Coxmos

<dl>

<dt>model</dt>
<dd>Coxmos model.</dd>


<dt>vector</dt>
<dd>Vector of loading</dd>


<dt>zero.rm</dt>
<dd>Logical. Remove variables equal to 0 (default: FALSE).</dd>


<dt>top</dt>
<dd>Numeric. Show "top" first variables. If top = NULL, all variables are shown (default: NULL).</dd>


<dt>auto.limits</dt>
<dd>Logical. If "auto.limits" = TRUE, limits are detected automatically (default: TRUE).</dd>


<dt>txt.x.angle</dt>
<dd>Numeric. Angle of X text (default: 0).</dd>

</dl>

loadingplot.fromVector.Coxmos: loadingplot.fromVector.Coxmos

Description

Usage

Arguments