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CpGFilter (version 1.1)

CpG Filtering Method Based on Intra-Class Correlation Coefficients

Description

Filter CpGs based on Intra-class Correlation Coefficients (ICCs) when replicates are available. ICCs are calculated by fitting linear mixed effects models to all samples including the un-replicated samples. Including the large number of un-replicated samples improves ICC estimates dramatically. The method accommodates any replicate design.

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Version

Install

install.packages('CpGFilter')

Monthly Downloads

142

Version

1.1

License

GPL-3

Maintainer

Jun Chen

Last Published

August 23rd, 2017

Functions in CpGFilter (1.1)

CpGFilterICC

CpG filtering method based on intra-class correlation coefficients.