abifToFastq

name of sequence, to appear in fastq file

seqname

fname

outfname

should low quality bases be trimmed from the ends?  TRUE or FALSE

trim

cutoff

minimum number of sequenced bases required in order to trim the read

min_seq_len

offset

Use sangerseqR to resolve the primary sequence if two sequences
are present.  May cause quality scores to be ignored. (Default: FALSE)

recall


This is an R implementation of Wibowo Arindrarto's abifpy.py trimming module,
which itself implement's Richard Mott's trimming algorithm
See <a href="https://github.com/bow/abifpy">https://github.com/bow/abifpy</a> for more details.


CrispRVariants provides tools for analysing the results of a
CRISPR-Cas9 mutagenesis sequencing experiment, or other sequencing experiments
where variants within a given region are of interest. These tools allow users to
localize variant allele combinations with respect to any genomic location (e.g.
the Cas9 cut site), plot allele combinations and calculate mutation rates with
flexible filtering of unrelated variants.

Helen Lindsay

CrispRVariants

Tools for counting and visualising mutations in a target location

abifToFastq function


This is an R implementation of Wibowo Arindrarto's abifpy.py trimming module,
which itself implement's Richard Mott's trimming algorithm
See <a href = 'https://github.com/bow/abifpy'>https://github.com/bow/abifpy</a> for more details.


abifToFastq: Read a file in ab1 (Sanger) format and convert to fastq

Description

Usage

Arguments

Value

Details

Examples