addClipped

addClipped,GAlignments-method


Extrapolates the mapping location of a read by assuming that
the clipped regions should map adjacent to the mapped locations.  This
is not always a good assumption, particularly in the case of chimeric reads!


CrispRVariants provides tools for analysing the results of a
CRISPR-Cas9 mutagenesis sequencing experiment, or other sequencing experiments
where variants within a given region are of interest. These tools allow users to
localize variant allele combinations with respect to any genomic location (e.g.
the Cas9 cut site), plot allele combinations and calculate mutation rates with
flexible filtering of unrelated variants.

addClipped: Extrapolates mapping location from clipped, aligned reads

Description

Usage

Arguments

Value