excludeFromBam

Regions to exclude, as <code><a rd-options="GenomicRanges" href="/link/GRanges?package=CrispRVariants&version=1.0.2&to=GenomicRanges" data-mini-rdoc="GenomicRanges::GRanges">GRanges</a></code>.

exclude.ranges

A character vector of alignments names to exclude

exclude.names


Returns a GAlignments excluding reads based on either name and/or location


CrispRVariants provides tools for analysing the results of a
CRISPR-Cas9 mutagenesis sequencing experiment, or other sequencing experiments
where variants within a given region are of interest. These tools allow users to
localize variant allele combinations with respect to any genomic location (e.g.
the Cas9 cut site), plot allele combinations and calculate mutation rates with
flexible filtering of unrelated variants.

Helen Lindsay

CrispRVariants

Tools for counting and visualising mutations in a target location

excludeFromBam function

Regions to exclude, as <code><a rd-options='GenomicRanges' href='GRanges'>GRanges</a></code>.

excludeFromBam: Removes reads from a bam file

Description

Usage

Arguments

Value