findSNVs

findSNVs,CrisprSet-method

minimum frequency snv to return (Default: 0.25)

freq

include chimeric reads when calculating SNV frequencies
(Default: TRUE)

include.chimeras


Find single nucleotide variants (SNVs) above a specified frequency
in a table of variants.


CrispRVariants provides tools for analysing the results of a
CRISPR-Cas9 mutagenesis sequencing experiment, or other sequencing experiments
where variants within a given region are of interest. These tools allow users to
localize variant allele combinations with respect to any genomic location (e.g.
the Cas9 cut site), plot allele combinations and calculate mutation rates with
flexible filtering of unrelated variants.

findSNVs: Find frequent SNVs

Description

Usage

Arguments

Value