rcAlns

target.strand

Should the alignment be oriented to match the strand

reverse.complement


Guides on the negative strand may be displayed with respect
to either strand.  This function checks whether a guide is on the negative
strand and should be reverse complemented.


CrispRVariants provides tools for analysing the results of a
CRISPR-Cas9 mutagenesis sequencing experiment, or other sequencing experiments
where variants within a given region are of interest. These tools allow users to
localize variant allele combinations with respect to any genomic location (e.g.
the Cas9 cut site), plot allele combinations and calculate mutation rates with
flexible filtering of unrelated variants.

rcAlns: Internal CrispRVariants function for deciding whether to reverse complement aligned reads

Description

Usage

Arguments

Value