transformAlnsToLong

alns

Add a blank row labelled "Other" (Default: FALSE)

add.other


Orders and transforms a reference sequence and a set of aligned sequences
into long format, i.e. one observation (tile position) per row.  Used internally by
<code><a rd-options="CrispRVariants" href="/link/plotAlignments?package=CrispRVariants&version=1.0.2&to=CrispRVariants" data-mini-rdoc="CrispRVariants::plotAlignments">plotAlignments</a></code>.


CrispRVariants provides tools for analysing the results of a
CRISPR-Cas9 mutagenesis sequencing experiment, or other sequencing experiments
where variants within a given region are of interest. These tools allow users to
localize variant allele combinations with respect to any genomic location (e.g.
the Cas9 cut site), plot allele combinations and calculate mutation rates with
flexible filtering of unrelated variants.

Helen Lindsay

CrispRVariants

Tools for counting and visualising mutations in a target location

transformAlnsToLong function


Orders and transforms a reference sequence and a set of aligned sequences
into long format, i.e. one observation (tile position) per row.  Used internally by
<code><a rd-options='CrispRVariants' href='plotAlignments'>plotAlignments</a></code>.


transformAlnsToLong: Transform data for plotting

Description

Usage

Arguments

Value