locations

<p>Spatial coordinates for each cell.</p>

datasets

Analyzes spatial transcriptomic data using cells-by-genes and cell location matrices to find gene pairs that coordinate their expression between spatially adjacent cells. It enables quantitative analysis and graphical assessment of these cross-expression patterns. See Sarwar et al. (2025) <doi:10.1101/2024.09.17.613579> and <https://github.com/gillislab/CrossExpression/> for more details.

Ameer Sarwar

CrossExpression

Cross-Expression Analysis of Spatial Transcriptomics Data

Sarah Choi

Leon French

Jesse Gillis

locations function

<p>A matrix with cells as rows and xy-coordinates as columns.</p>

Format

Example cell location matrix — locations

Example cell location matrix

locations: Example cell location matrix

Description

Usage

Arguments

Format