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CrypticIBDcheck (version 0.3-3)
Identifying Cryptic Relatedness in Genetic Association Studies
Description
Exploratory tools to identify closely related subjects using autosomal genetic marker data.
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0.3-3
0.3-1
0.2-3
0.2-1
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Install
install.packages('CrypticIBDcheck')
Monthly Downloads
43
Version
0.3-3
License
GPL-3
Maintainer
Brad McNeney
Last Published
May 17th, 2018
Functions in CrypticIBDcheck (0.3-3)
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new.IBD
Create a data structure suitable for input to
IBDcheck
Nhlsim
Example data for the CrypticIBDcheck package
RutgersMapB36
physical and genetic map positions for a collection of markers on chromosome 1 to 22
IBD
Constructor function for objects of class
IBD
filter.control
Set options for quality control filtering of data.
plot.IBD
plot estimated IBD coefficients for pairs of study subjects, along with prediction ellipses based on simulated pairs of known relationships
countIBS
calculates counts of 0, 1 and 2 IBS
SNPgenmap
convert physical map positions on build 36 of the genome to genetic map positions
IBDcheck
estimate IBD coefficients to identify cryptic relatedness in genetic association studies
CrypticIBDcheck-package
identify cryptic relatedness in genetic association studies
sim.control
Set options that control gene drop simulation of relationship pairs.