Cyclops (version 2.0.3)

finalizeSqlCyclopsData: finalizeSqlCyclopsData

Description

finalizeSqlCyclopsData finalizes a Cyclops data object

Usage

finalizeSqlCyclopsData(
  object,
  addIntercept = FALSE,
  useOffsetCovariate = NULL,
  offsetAlreadyOnLogScale = FALSE,
  sortCovariates = FALSE,
  makeCovariatesDense = NULL
)

Arguments

object

Cyclops data object

addIntercept

Add an intercept covariate if one was not imported through SQL

useOffsetCovariate

Specify is a covariate should be used as an offset (fixed coefficient = 1). Set option to -1 to specify the time-to-event column, otherwise include a single numeric or character covariate name.

offsetAlreadyOnLogScale

Set to TRUE to indicate that offsets were log-transformed before importing into Cyclops data object.

sortCovariates

Sort covariates in numeric-order with intercept first if it exists.

makeCovariatesDense

List of numeric or character covariates names to densely represent in Cyclops data object. For efficiency, we suggest making atleast the intercept dense.