CytOpT (version 0.9.8)

barplot_prop: Function to display a bland plot in order to visually assess the agreement between CytOpt estimation of the class proportions and the estimate of the class proportions provided through manual gating.

Description

Function to display a bland plot in order to visually assess the agreement between CytOpt estimation of the class proportions and the estimate of the class proportions provided through manual gating.

Usage

barplot_prop(proportions, title = "", xaxis_angle = 45)

Value

a ggplot object

Arguments

proportions

data.frame of (true and) estimated proportions from CytOpt()

title

plot title. Default is "", i.e. no title.

xaxis_angle

scalar indicating an angle to tilt the labels of x_axis. Default is 45.

Examples

if(interactive()){

res <- CytOpT(X_s = HIPC_Stanford_1228_1A, X_t = HIPC_Stanford_1369_1A, 
             Lab_source = HIPC_Stanford_1228_1A_labels,
             eps = 0.0001, lbd = 0.0001, n_iter = 10000, n_stoc=10,
             step_grad = 10, step = 5, power = 0.99, 
             method='minmax')
barplot_prop(res$proportions)

}