CytoProfile

CytoProfile-package

<img src="figures/logo.png?package=CytoProfile&version=0.2.3" style="float: right" alt="logo" width="120">
Provides comprehensive cytokine profiling analysis through quality control using biologically meaningful cutoffs on raw cytokine measurements and by testing for distributional symmetry to recommend appropriate transformations. Offers exploratory data analysis with summary statistics, enhanced boxplots, and barplots, along with univariate and multivariate analytical capabilities for in-depth cytokine profiling such as Principal Component Analysis based on Andrzej Maćkiewicz and Waldemar Ratajczak (1993) tools:::Rd_expr_doi("10.1016/0098-3004(93)90090-R"), Sparse Partial Least Squares Discriminant Analysis based on Lê Cao K-A, Boitard S, and Besse P (2011) tools:::Rd_expr_doi("10.1186/1471-2105-12-253"), Random Forest based on Breiman, L. (2001) tools:::Rd_expr_doi("10.1023/A:1010933404324"), and Extreme Gradient Boosting based on Tianqi Chen and Carlos Guestrin (2016) tools:::Rd_expr_doi("10.1145/2939672.2939785").

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Provides comprehensive cytokine profiling analysis through quality control using biologically meaningful cutoffs on raw cytokine measurements and by testing for distributional symmetry to recommend appropriate transformations. Offers exploratory data analysis with summary statistics, enhanced boxplots, and barplots, along with univariate and multivariate analytical capabilities for in-depth cytokine profiling such as Principal Component Analysis based on Andrzej Maćkiewicz and Waldemar Ratajczak (1993) <doi:10.1016/0098-3004(93)90090-R>, Sparse Partial Least Squares Discriminant Analysis based on Lê Cao K-A, Boitard S, and Besse P (2011) <doi:10.1186/1471-2105-12-253>, Random Forest based on Breiman, L. (2001) <doi:10.1023/A:1010933404324>, and Extreme Gradient Boosting based on Tianqi Chen and Carlos Guestrin (2016) <doi:10.1145/2939672.2939785>.

Shubh Saraswat

Cytokine Profiling Analysis Tool

Xiaohua Douglas Zhang

CytoProfile-package function

Maintainer: Shubh Saraswat <a href="/link/shubh.saraswat00%40gmail.com?package=CytoProfile&version=0.2.3" data-mini-rdoc="CytoProfile::shubh.saraswat00@gmail.com">shubh.saraswat00@gmail.com</a> (<a href="https://orcid.org/0009-0009-2359-1484">ORCID</a>) [copyright holder]
Authors:<ul>
<li>Xiaohua Douglas Zhang <a href="/link/douglas.zhang%40uky.edu?package=CytoProfile&version=0.2.3" data-mini-rdoc="CytoProfile::douglas.zhang@uky.edu">douglas.zhang@uky.edu</a> (<a href="https://orcid.org/0000-0002-2486-7931">ORCID</a>)</li>
</ul>

Author

<img src='figures/logo.png' style='float: right' alt='logo' width='120' />
Provides comprehensive cytokine profiling analysis through quality control using biologically meaningful cutoffs on raw cytokine measurements and by testing for distributional symmetry to recommend appropriate transformations. Offers exploratory data analysis with summary statistics, enhanced boxplots, and barplots, along with univariate and multivariate analytical capabilities for in-depth cytokine profiling such as Principal Component Analysis based on Andrzej Maćkiewicz and Waldemar Ratajczak (1993) tools:::Rd_expr_doi("10.1016/0098-3004(93)90090-R"), Sparse Partial Least Squares Discriminant Analysis based on Lê Cao K-A, Boitard S, and Besse P (2011) tools:::Rd_expr_doi("10.1186/1471-2105-12-253"), Random Forest based on Breiman, L. (2001) tools:::Rd_expr_doi("10.1023/A:1010933404324"), and Extreme Gradient Boosting based on Tianqi Chen and Carlos Guestrin (2016) tools:::Rd_expr_doi("10.1145/2939672.2939785").

CytoProfile: Cytokine Profiling Analysis Tool — CytoProfile-package

Maintainer: Shubh Saraswat <a href='mailto:shubh.saraswat00@gmail.com'>shubh.saraswat00@gmail.com</a> (<a href='https://orcid.org/0009-0009-2359-1484'>ORCID</a>) [copyright holder]
Authors:<ul>
<li>Xiaohua Douglas Zhang <a href='mailto:douglas.zhang@uky.edu'>douglas.zhang@uky.edu</a> (<a href='https://orcid.org/0000-0002-2486-7931'>ORCID</a>)</li>
</ul>

CytoProfile-package: CytoProfile: Cytokine Profiling Analysis Tool

Description

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Author

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