ExampleData3

Contains observed concentrations of cytokines and their respective treatment
and groups, derived from:

datasets

Provides comprehensive cytokine profiling analysis through quality control using biologically meaningful cutoffs on raw cytokine measurements and by testing for distributional symmetry to recommend appropriate transformations. Offers exploratory data analysis with summary statistics, enhanced boxplots, and barplots, along with univariate and multivariate analytical capabilities for in-depth cytokine profiling such as Principal Component Analysis based on Andrzej Maćkiewicz and Waldemar Ratajczak (1993) <doi:10.1016/0098-3004(93)90090-R>, Sparse Partial Least Squares Discriminant Analysis based on Lê Cao K-A, Boitard S, and Besse P (2011) <doi:10.1186/1471-2105-12-253>, Random Forest based on Breiman, L. (2001) <doi:10.1023/A:1010933404324>, and Extreme Gradient Boosting based on Tianqi Chen and Carlos Guestrin (2016) <doi:10.1145/2939672.2939785>.

Shubh Saraswat

CytoProfile

Cytokine Profiling Analysis Tool

Xiaohua Douglas Zhang

ExampleData3 function

A data frame with 64 rows and 14 columns:<dl>
<dt>Stimulation</dt>
<dd>Stimulation assigned to the subjects.</dd><dt>Group</dt>
<dd>Group assigned to the subjects.</dd><dt>GM.CSF</dt>
<dd>Observed concentration of GM.CSF cytokine.</dd><dt>IFN.G</dt>
<dd>Observed concentration of IFN.G cytokine.</dd><dt>IL.10</dt>
<dd>Observed concentration of IL.10 cytokine.</dd><dt>CCL.20.MIP.3A</dt>
<dd>Observed concentration of CCL.20.MIP.3A cytokine.</dd><dt>IL.12.P70</dt>
<dd>Observed concentration of IL.12.P70 cytokine.</dd><dt>IL.13</dt>
<dd>Observed concentration of IL.13 cytokine.</dd><dt>IL.15</dt>
<dd>Observed concentration of IL.15 cytokine.</dd><dt>IL.9</dt>
<dd>Observed concentration of IL.9 cytokine.</dd><dt>IL.1B</dt>
<dd>Observed concentration of IL.1B cytokine.</dd><dt>IL.21</dt>
<dd>Observed concentration of IL.21 cytokine.</dd><dt>IL.6</dt>
<dd>Observed concentration of IL.6 cytokine.</dd><dt>TNF.A</dt>
<dd>Observed concentration of TNF.A cytokine.</dd>
</dl>

Format

Example Cytokine Profiling Data 3. — ExampleData3

A data frame with 64 rows and 14 columns:<dl>
<dt>Stimulation</dt>
<dd>Stimulation assigned to the subjects.</dd>

<dt>Group</dt>
<dd>Group assigned to the subjects.</dd>

<dt>GM.CSF</dt>
<dd>Observed concentration of GM.CSF cytokine.</dd>

<dt>IFN.G</dt>
<dd>Observed concentration of IFN.G cytokine.</dd>

<dt>IL.10</dt>
<dd>Observed concentration of IL.10 cytokine.</dd>

<dt>CCL.20.MIP.3A</dt>
<dd>Observed concentration of CCL.20.MIP.3A cytokine.</dd>

<dt>IL.12.P70</dt>
<dd>Observed concentration of IL.12.P70 cytokine.</dd>

<dt>IL.13</dt>
<dd>Observed concentration of IL.13 cytokine.</dd>

<dt>IL.15</dt>
<dd>Observed concentration of IL.15 cytokine.</dd>

<dt>IL.9</dt>
<dd>Observed concentration of IL.9 cytokine.</dd>

<dt>IL.1B</dt>
<dd>Observed concentration of IL.1B cytokine.</dd>

<dt>IL.21</dt>
<dd>Observed concentration of IL.21 cytokine.</dd>

<dt>IL.6</dt>
<dd>Observed concentration of IL.6 cytokine.</dd>

<dt>TNF.A</dt>
<dd>Observed concentration of TNF.A cytokine.</dd>


</dl>

ExampleData3: Example Cytokine Profiling Data 3.

Description

Usage

Arguments

Format

References

Examples