CytobankAPI (version 2.2.0)

panels: Panel Endpoints

Description

Interact with panel endpoints. A collection of channels, the markers being studied on them, and the FCS files this applies to form a panel. Learn more about panels in Cytobank.

Usage

# S4 method for UserSession
panels.list(
  UserSession,
  experiment_id,
  output = "default",
  timeout = UserSession@short_timeout
)
# S4 method for UserSession
panels.show(
  UserSession,
  experiment_id,
  panel_id,
  output = "default",
  timeout = UserSession@short_timeout
)

Arguments

UserSession

Cytobank UserSession object

experiment_id

integer representing an experiment ID

output

character representing the output format [optional]
- panels.list, panels.show : ("default", "raw")

timeout

integer representing the request timeout time in seconds [optional]

panel_id

integer representing a panel ID

Details

panels.list List all panels from an experiment. Outputs a formatted list [default] or raw list with all fields present.
- Optional output parameter, specify one of the following: ("default", "raw")

panels.show Show panel details from an experiment. Outputs a full list with all fields present, or an IDs/names list (See attachments examples section for IDs/names list example).
- Optional output parameter, specify one of the following: ("default", "raw")

Examples

if (FALSE) # Authenticate via username/password
cyto_session <- authenticate(site="premium", username="cyril_cytometry", password="cytobank_rocks!")
# Authenticate via auth_token
cyto_session <- authenticate(site="premium", auth_token="my_secret_auth_token")

if (FALSE) # Full panel list with all fields present, with a dataframe of channels
panels.list(cyto_session, 22)

# Raw list of all panels with all fields present
panels.list(cyto_session, 22, output="raw")

if (FALSE) # Full panel info with all fields present
panels.show(cyto_session, 22, panel_id=2)