CytobankAPIstats (version 2.0)

getnewind: Rearranges signaling results matrix with rows in the desired order as outputs

Description

Rearranges signaling results matrix with rows in the desired order as outputs

Usage

getnewind(fixlabels, results)

Arguments

fixlabels

- List of strings with desired order of labels

results

- Output of call to parsestats

Value

- Returns a matrix with rows organized in desired order specified by fixlabels

Examples

# NOT RUN {
#Example starting with obtaining data from Cytobank
library(CytobankAPI)
cyto_session <- authenticate(site="premium", username="myusername", password="mypassword")
markersofinterest<-c("CD3","CD56")
popsofinterest<-c("CD4 T cells","NK cells")
exptID=4
type=F
results<-analyzedata(cyto_session,markersofinterest,popsofinterest,exptID,type)
fixlabels<-c("CD4 T cells CD56","NK cells CD56","CD4 T cells CD3","NK cells CD3")
getnewind(fixlabels,results)
# }
# NOT RUN {
#Example with simple matrix
data<-matrix(1:8,nrow=4,ncol=2,byrow=TRUE)
colnames(data)<-c("Control","Patient")
rownames(data)<-c("NK cells CD3","CD4 T cells CD3","CD4 T cells CD56","NK cells CD56")
fixlabels<-c("CD4 T cells CD56","NK cells CD56","CD4 T cells CD3","NK cells CD3")
getnewind(fixlabels,data)
# }