archiveTask

Create an archive containing the files of a given task.

Tools, methods and processes for the management
of analysis workflows. These lightweight solutions facilitate
structuring R&D activities. These solutions were developed to comply
with Good Documentation Practice (GDP),
with ALCOA+ principles as proposed by the U.S. FDA, and
with FAIR principles as discussed by Jacobsen et al. (2017) <doi:10.1162/dint_r_00024>.

Gregoire Thomas

D4TAlink.light

GDP - Workflow Management

archiveTask function

<dl><dt>task</dt>
<dd>Object of class <code>D4TAlinkTask</code>, as created by <code>initTask</code>.</dd>
<dt>file</dt>
<dd>full name of the output zip file</dd>
<dt>overwrite</dt>
<dd>overwrite the output zip file is it exists</dd>
<dt>...</dt>
<dd>Arguments passed on to <code><a href="/link/utils%3A%3Azip?package=D4TAlink.light&version=2.1.18" data-mini-rdoc="D4TAlink.light::utils::zip">utils::zip</a></code><dl>
 <dt><code>zipfile</code></dt>
<dd>The pathname of the zip file: tilde expansion (see
 <code><a href="/link/path.expand?package=D4TAlink.light&version=2.1.18" data-mini-rdoc="D4TAlink.light::path.expand">path.expand</a></code>) will be performed.</dd></dl></dd> <dt><code>files</code></dt>
<dd>A character vector of recorded filepaths to be included.</dd> <dt><code>flags</code></dt>
<dd>A character string of flags to be passed to the command:
 see &#8216;Details&#8217;.</dd> <dt><code>extras</code></dt>
<dd>An optional character vector: see &#8216;Details&#8217;.</dd> <dt><code>zip</code></dt>
<dd>A character string specifying the external command to be used.</dd> 
</dl>

Arguments

Create an archive containing the files of a given task. — archiveTask

<dl>

<dt>task</dt>
<dd>Object of class <code>D4TAlinkTask</code>, as created by <code>initTask</code>.</dd>


<dt>file</dt>
<dd>full name of the output zip file</dd>


<dt>overwrite</dt>
<dd>overwrite the output zip file is it exists</dd>


<dt>...</dt>
<dd>Arguments passed on to <code><a href='https://rdrr.io/r/utils/zip.html'>utils::zip</a></code><dl>
 <dt><code>zipfile</code></dt>
<dd>The pathname of the zip file: tilde expansion (see
 <code><a href='https://rdrr.io/r/base/path.expand.html'>path.expand</a></code>) will be performed.</dd>

 <dt><code>files</code></dt>
<dd>A character vector of recorded filepaths to be included.</dd>

 <dt><code>flags</code></dt>
<dd>A character string of flags to be passed to the command:
 see &#8216;Details&#8217;.</dd>

 <dt><code>extras</code></dt>
<dd>An optional character vector: see &#8216;Details&#8217;.</dd>

 <dt><code>zip</code></dt>
<dd>A character string specifying the external command to be used.</dd>

 
</dl></dd>

</dl>

archiveTask: Create an archive containing the files of a given task.

Description

Usage

Value

Arguments