initTaskRmd

Create task template in Rmd format.

Tools, methods and processes for the management
of analysis workflows. These lightweight solutions facilitate
structuring R&D activities. These solutions were developed to comply
with Good Documentation Practice (GDP),
with ALCOA+ principles as proposed by the U.S. FDA, and
with FAIR principles as discussed by Jacobsen et al. (2017) <doi:10.1162/dint_r_00024>.

Gregoire Thomas

D4TAlink.light

GDP - Workflow Management

initTaskRmd function

<dl><dt>task</dt>
<dd>Object of class <code>D4TAlinkTask</code>, as created by <code>initTask</code>.</dd>
<dt>encoding</dt>
<dd>encoding to be assumed for input strings. It is
 used to mark character strings as known to be in
 Latin-1, UTF-8 or to be bytes: it is not used to re-encode the input.
 To do the
 latter, specify the encoding as part of the connection <code>con</code> or
 via <code><a href="/link/options?package=D4TAlink.light&version=2.1.18" data-mini-rdoc="D4TAlink.light::options">options</a>(encoding=)</code>: see the examples
 and &#8216;Details&#8217;.</dd>
<dt>overwrite</dt>
<dd>overwrite Rmd file if exists, default FALSE</dd>
<dt>suffix</dt>
<dd>Filename suffix, used to develop scripts for sub-analyses for a given task, default NA.</dd></dl>

Arguments

Create task template in Rmd format. — initTaskRmd

<dl>

<dt>task</dt>
<dd>Object of class <code>D4TAlinkTask</code>, as created by <code>initTask</code>.</dd>


<dt>encoding</dt>
<dd>encoding to be assumed for input strings. It is
 used to mark character strings as known to be in
 Latin-1, UTF-8 or to be bytes: it is not used to re-encode the input.
 To do the
 latter, specify the encoding as part of the connection <code>con</code> or
 via <code><a href='https://rdrr.io/r/base/options.html'>options</a>(encoding=)</code>: see the examples
 and &#8216;Details&#8217;.</dd>


<dt>overwrite</dt>
<dd>overwrite Rmd file if exists, default FALSE</dd>


<dt>suffix</dt>
<dd>Filename suffix, used to develop scripts for sub-analyses for a given task, default NA.</dd>

</dl>

initTaskRmd: Create task template in Rmd format.

Description

Usage

Value

Arguments