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DAISIE (version 1.4)

Macaronesia_datalist: Colonization and branching times of terrestrial avifaunal clades from Azores, Canary Islands, Cape Verde and Madeira in list format, accepted by DAISIE_ML and DAISIE_loglik_all

Description

A list containing the colonization and branching times of the terrestrial avifauna in 4 archipelagos: Azores, Canary Islands, Cape Verde and Madeira. It is an R list object with the 4 main elements corresponding to each of the archipelagos (e.g. Macaronesia_datalist[[1]] calls the Azores data). Each of the four elements is then made of several elemants: The first element of the list for an archipelago has two components: $island_age - the island age $not_present - the number of mainland lineages that are not present on the island The following elements of the list each contains information on a single colonist lineage on the island and has 5 components: $colonist_name - the name of the species or clade that colonized the island $branching_times - island age and stem age of the population/species in the case of Non-endemic, Non-endemic_MaxAge, Endemic_MaxAge and Endemic anagenetic species. For cladogenetic species the island age and branching times of the radiation including the stem age of the radiation are shown. $stac - the status of the colonist * Non_endemic_MaxAge: 1 * Endemic: 2 * Endemic&Non_Endemic: 3 * Non_endemic: 4 * Endemic_MaxAge: 5

$missing_species - number of island species that were not sampled for particular clade (only applicable for endemic clades) $type1or2 - whether the colonist belongs to type 1 or type 2. In this dataset all are equal to 1.

Usage

data(Macaronesia_datalist)

Arguments

Format

A list with 4 main elements for each archipelago. Each element has several sub-elements.

See Also

DAISIE_dataprep, DAISIE_ML