Island_colonist-class

Defines the <code>island_tbl</code> class which is used when extracting information
from the phylogenetic and island data to be used for constructing a
<code>daisie_data_tbl</code>

Extracts colonisation and branching times of island
species to be used for analysis in the R package 'DAISIE'. It uses
phylogenetic and endemicity data to extract the separate island colonists
and store them.

Joshua W. Lambert

DAISIEprep

Extracts Phylogenetic Island Community Data from Phylogenetic
Trees

Luis Valente

Pedro Santos Neves

Lizzie Roeble

Theo Pannetier

Island_colonist-class function

<dl>
<dt><code>clade_name</code></dt>
<dd>character.</dd></dl>
<dt><code>status</code></dt>
<dd>character.</dd>
<dt><code>missing_species</code></dt>
<dd>character.</dd>
<dt><code>col_time</code></dt>
<dd>numeric.</dd>
<dt><code>col_max_age</code></dt>
<dd>logical.</dd>
<dt><code>branching_times</code></dt>
<dd>numeric.</dd>
<dt><code>min_age</code></dt>
<dd>numeric.</dd>
<dt><code>species</code></dt>
<dd>character.</dd>
<dt><code>clade_type</code></dt>
<dd>numeric.</dd>

Slots

Defines the island_tbl class which is used when extracting information
from the phylogenetic and island data to be used for constructing a
daisie_data_tbl — Island_colonist-class

<dl>
<dt><code>clade_name</code></dt>
<dd>character.</dd>


<dt><code>status</code></dt>
<dd>character.</dd>


<dt><code>missing_species</code></dt>
<dd>character.</dd>


<dt><code>col_time</code></dt>
<dd>numeric.</dd>


<dt><code>col_max_age</code></dt>
<dd>logical.</dd>


<dt><code>branching_times</code></dt>
<dd>numeric.</dd>


<dt><code>min_age</code></dt>
<dd>numeric.</dd>


<dt><code>species</code></dt>
<dd>character.</dd>


<dt><code>clade_type</code></dt>
<dd>numeric.</dd>


</dl>

Defines the <code>island_tbl</code> class which is used when extracting information
from the phylogenetic and island data to be used for constructing a
<code>daisie_data_tbl</code>

Island_colonist-class: Defines the `island_tbl` class which is used when extracting information from the phylogenetic and island data to be used for constructing a `daisie_data_tbl`

Description

Arguments

Slots