any_polyphyly

Checks whether there are any species in the phylogeny that have multiple
tips (i.e. multiple subspecies per species) and whether any of those tips are
paraphyletic (i.e. are their subspecies more distantly related to each other
than to other subspecies or species).

Extracts colonisation and branching times of island
species to be used for analysis in the R package 'DAISIE'. It uses
phylogenetic and endemicity data to extract the separate island colonists
and store them.

Joshua W. Lambert

DAISIEprep

Extracts Phylogenetic Island Community Data from Phylogenetic
Trees

Luis Valente

Pedro Santos Neves

Lizzie Roeble

Theo Pannetier

any_polyphyly function

<dl><dt>phylod</dt>
<dd>A <code>phylo4d</code> object from the package <code>phylobase</code> containing
phylogenetic and endemicity data for each species.</dd></dl>

Arguments

Checks whether there are any species in the phylogeny that have multiple
tips (i.e. multiple subspecies per species) and whether any of those tips are
paraphyletic (i.e. are their subspecies more distantly related to each other
than to other subspecies or species). — any_polyphyly

<dl>

<dt>phylod</dt>
<dd>A <code>phylo4d</code> object from the package <code>phylobase</code> containing
phylogenetic and endemicity data for each species.</dd>

</dl>

Checks whether there are any species in the phylogeny that have multiple
tips (i.e. multiple subspecies per species) and whether any of those tips are
paraphyletic (i.e. are their subspecies more distantly related to each other
than to other subspecies or species).

any_polyphyly: Checks whether there are any species in the phylogeny that have multiple tips (i.e. multiple subspecies per species) and whether any of those tips are paraphyletic (i.e. are their subspecies more distantly related to each other than to other subspecies or species).

Description

Usage

Value

Arguments

Examples