extract_biogeobears_ancestral_states_probs

Extract the probabilities of each endemicity status for tip and internal node
states from the output of an optimisation performed with BioGeoBEARS

Extracts colonisation and branching times of island
species to be used for analysis in the R package 'DAISIE'. It uses
phylogenetic and endemicity data to extract the separate island colonists
and store them.

Joshua W. Lambert

DAISIEprep

Extracts Phylogenetic Island Community Data from Phylogenetic
Trees

Luis Valente

Pedro Santos Neves

Lizzie Roeble

Theo Pannetier

extract_biogeobears_ancestral_states_probs function

<dl><dt>biogeobears_res</dt>
<dd>a list, the output of <code>BioGeoBEARS::bears_optim_run()</code></dd></dl>

Arguments

Extract ancestral state probabilities from BioGeoBEARS output — extract_biogeobears_ancestral_states_probs

<dl>

<dt>biogeobears_res</dt>
<dd>a list, the output of <code>BioGeoBEARS::bears_optim_run()</code></dd>

</dl>

extract_biogeobears_ancestral_states_probs: Extract ancestral state probabilities from BioGeoBEARS output

Description

Usage

Value

Arguments