extract_nonendemic_forced

Extract non-endemic colonist that is forced to be a singleton by user

internal

Extracts colonisation and branching times of island
species to be used for analysis in the R package 'DAISIE'. It uses
phylogenetic and endemicity data to extract the separate island colonists
and store them.

Joshua W. Lambert

DAISIEprep

Extracts Phylogenetic Island Community Data from Phylogenetic
Trees

Luis Valente

Pedro Santos Neves

Lizzie Roeble

Theo Pannetier

extract_nonendemic_forced function

<dl><dt>phylod</dt>
<dd>A <code>phylo4d</code> object from the package <code>phylobase</code> containing
phylogenetic and endemicity data for each species.</dd>
<dt>species_label</dt>
<dd>The tip label of the species of interest.</dd>
<dt>island_tbl</dt>
<dd>An instance of the <code>Island_tbl</code> class.</dd></dl>

Arguments

Extract non-endemic colonist that is forced to be a singleton by user — extract_nonendemic_forced

<dl>

<dt>phylod</dt>
<dd>A <code>phylo4d</code> object from the package <code>phylobase</code> containing
phylogenetic and endemicity data for each species.</dd>


<dt>species_label</dt>
<dd>The tip label of the species of interest.</dd>


<dt>island_tbl</dt>
<dd>An instance of the <code>Island_tbl</code> class.</dd>

</dl>

extract_nonendemic_forced: Extract non-endemic colonist that is forced to be a singleton by user

Description

Usage

Value

Arguments