get_endemic_species

Checks whether the focal species (given by its tip lable in species_label
argument) is part of an endemic clade on the island and a vector of the
endemic species, either a single species for a singleton or multiple species
in an endemic clade.

internal

Extracts colonisation and branching times of island
species to be used for analysis in the R package 'DAISIE'. It uses
phylogenetic and endemicity data to extract the separate island colonists
and store them.

Joshua W. Lambert

DAISIEprep

Extracts Phylogenetic Island Community Data from Phylogenetic
Trees

Luis Valente

Pedro Santos Neves

Lizzie Roeble

Theo Pannetier

get_endemic_species function

<dl><dt>phylod</dt>
<dd>A <code>phylo4d</code> object from the package <code>phylobase</code> containing
phylogenetic and endemicity data for each species.</dd>
<dt>species_label</dt>
<dd>The tip label of the species of interest.</dd></dl>

Arguments

Checks whether the focal species (given by its tip lable in species_label
argument) is part of an endemic clade on the island and a vector of the
endemic species, either a single species for a singleton or multiple species
in an endemic clade. — get_endemic_species

<dl>

<dt>phylod</dt>
<dd>A <code>phylo4d</code> object from the package <code>phylobase</code> containing
phylogenetic and endemicity data for each species.</dd>


<dt>species_label</dt>
<dd>The tip label of the species of interest.</dd>

</dl>

Checks whether the focal species (given by its tip lable in species_label
argument) is part of an endemic clade on the island and a vector of the
endemic species, either a single species for a singleton or multiple species
in an endemic clade.

get_endemic_species: Checks whether the focal species (given by its tip lable in species_label argument) is part of an endemic clade on the island and a vector of the endemic species, either a single species for a singleton or multiple species in an endemic clade.

Description

Usage

Value

Arguments